The Majerda delta formation has been the subject of many studies since the late XIXe century. The reconstruction of the fluvial palaeo-environments of the lower Majerda valley is significant as it is critical to understand the decline of Utica following the siltation of the harbor, which is presently buried under sediments. The progression of the delta across the corridor separating the Southern and the Northern compartments of the ancient Utica bay is the cornerstone of our research on the delta. On the basis of a GIS we propose to identify hydro- and morpho-sedimentary processes of the deltaic progradation dynamics. They lead to innovative ways of considering the initial implantation site of Utica, the conditions of harbor siltation and the Majerda River itself across the Northern compartment. Observations and analysis from the GIS allowed highlighting a double system of alluvial fans over the whole delta. The first component which may be described as “torrential” is present throughout the delta fringe, while the second category of flat alluvial fans occurs at the Majerda defluviation sites, forming coalescing alluvial lobes. The ancient merging of these two morphological systems close to Utica could reflect a process of harbor silting more complex than previously considered, the Majerda River being considered as the unique factor of change so far.